Key to organism acronyms

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OrganismAcronymAccession
***** Bacterial species *****
Abiotrophia adiacensAadiD50540
Abiotrophia defectivaAdefD50541
Abiotrophia elegansAeleAB022026
Acetivibrio cellulolyticusAcelL35516
Acetivibrio cellulosolvensAcel_1L35515
Acetobacter acetiAaceX74066
Acetobacter diazotrophicusAdiaX75618
Acetobacter europaeusAeurZ21936
Acetobacter hanseniiAhanX75620
Acetobacter intermediusAintY14694
Acetobacter liquefaciensAliqX75617
Acetobacter oboediensAoboAJ001631
Acetobacter pasteurianusApasX71863
Acetobacter pomorumApomAJ001632
Acetobacter sp.ACETAF062474
Acetobacter xylinumAxylX75619
Acetobacter xylinusAxyl_1AJ007698
Acetobacterium psammolithicumApsaAF132739
Acetogenium kivuiAkivL09160
Acetohalobium arabaticumAaraX89077
Acetomaculum ruminisArumM59083
Acetonema longumAlonM61919
Acholeplasma laidlawiiAlaiU14905
Acholeplasma modicumAmodM23933
Acholeplasma oculiAocuU14906
Acholeplasma polakiiApolAF031479
Achromatium minusAminAJ010596
Achromatium oxaliferumAoxaL42543
Achromobacter piechaudiiApieAB010841
Achromobacter ruhlandiiAruhAF205370
Achromobacter sp.ACHRAF227159
Achromobacter xylosoxidansAxyl_2AF232712
Acidaminobacter hydrogenoformansAhydAF016691
Acidaminococcus fermentansAferX78017
Acidimicrobium ferrooxidansAfer_1U75647
Acidiphilium angustumAangD30772
Acidiphilium cryptumAcryY18446
Acidiphilium multivorumAmulAB006712
Acidiphilium organovorumAorgD30775
Acidiphilium rubrumArubD30776
Acidiphilium sp.ACIDX91796
Acidithiobacillus ferrooxidans ATCC 23270Afer_4DQ909077
Acidobacterium capsulatumAcapD26171
Acidocella aminolyticaAamiD30771
Acidocella facilisAfacD30774
Acidocella sp.ACID_1X91797
Acidomonas methanolicaAmetX77468
Acidosphaera rubrifaciensArub_1D86512
Acidothermus cellulolyticumAcel_2X70635
Acidothermus cellulolyticusAcel_3AJ007290
Acidovorax anthuriiAantAJ007013
Acidovorax avenaeAaveAF137506
Acidovorax defluviiAdef_1Y18616
Acidovorax delafieldiiAdelAF078764
Acidovorax facilisAfac_1AF078765
Acidovorax konjaciAkonAF137507
Acidovorax sp.ACID_2AY228545
Acidovorax temperansAtemAF078766
Acidovorax wohlfahrtiiAwohAJ400840
Acinetobacter anitratusAaniU10874
Acinetobacter baumanniiAbauX81667
Acinetobacter calcoaceticusAcalZ93434
Acinetobacter haemolyticusAhaeZ93436
Acinetobacter johnsoniiAjohZ93439
Acinetobacter juniiAjunZ93437
Acinetobacter lwoffiAlwoX81665
Acinetobacter lwoffiiAlwo_1Z93440
Acinetobacter radioresistensAradZ93444
Acinetobacter sp.ACINZ93453
Acinetobacter venetianusAvenU71006
Acrocarpaspora pleiomorphaApleAB025318
Actinoalloteichus cyanogriseusAcyaAB006178
Actinobacillus actinomycetemcomitansAactX90833
Actinobacillus capsulatusAcap_1M75069
Actinobacillus equuliAequM75072
Actinobacillus hominisAhomL06076
Actinobacillus indolicusAindU65584
Actinobacillus lignieresiiAligM75068
Actinobacillus minorAmin_1U65582
Actinobacillus murisAmurAF024526
Actinobacillus pleuropneumoniaeAple_1M75074
Actinobacillus porcinusAporU65583
Actinobacillus salpingitidisAsalL06077
Actinobacillus seminisAsemM75047
Actinobacillus sp.ACTIY09654
Actinobacillus succinogenesAsucAF024525
Actinobacillus suisAsuiM75071
Actinobacillus ureaeAureM75075
Actinobaculum schaaliiAschY12329
Actinobispora alaninophilaAalaAF056708
Actinobispora aurantiacaAaurAF056707
Actinobispora xinjiangensisAxinAF056709
Actinobispora yunnanensisAyunD85472
Actinocorallia herbidaAherD85473
Actinokineospora diospyrosaAdioAF114797
Actinokineospora globicatenaAgloAF114798
Actinokineospora inagensisAinaAF114799
Actinokineospora ripariaAripAF114802
Actinokineosporia ripariaArip_1X76953
Actinomadura atramentariaAatrU49000
Actinomadura aurantiacaAaur_1D50669
Actinomadura catellatosporaAcatAF154127
Actinomadura citreaAcitU49001
Actinomadura coeruleaAcoeU49002
Actinomadura cremeaAcreAF134067
Actinomadura echinosporaAechU49004
Actinomadura fibrosaAfibAF163114
Actinomadura formosensisAforAB006172
Actinomadura fulvescensAfulU49005
Actinomadura glomerataAglo_1D50660
Actinomadura glucoflavusAgluAF153881
Actinomadura hibiscaAhibAF163115
Actinomadura kijaniataAkijX97890
Actinomadura libanoticaAlibU49007
Actinomadura lividaAlivAF163116
Actinomadura longicatenaAlon_1AF163117
Actinomadura luteofluorescensAlutU49008
Actinomadura macraAmacU49009
Actinomadura maduraeAmadX97889
Actinomadura oligosporaAoliAF163118
Actinomadura pelletieriApelAF163119
Actinomadura rubrobruneaArub_2AF134069
Actinomadura rugatobisporaArugU49010
Actinomadura spadixAspaAF163120
Actinomadura umbrinaAumbAF163121
Actinomadura verrucososporaAverU49011
Actinomadura vinaceaAvinAF134070
Actinomadura viridisAvirD85467
Actinomadura yumaensisAyumAF163122
Actinomyces birnadiiAbirX79224
Actinomyces bovisAbovX81061
Actinomyces bowdeniiAbowAJ234039
Actinomyces canisAcanAJ243891
Actinomyces denticolensAdenX80412
Actinomyces europaeusAeur_1Y08828
Actinomyces georgiaeAgeoX80413
Actinomyces gerencseriaeAgerX80414
Actinomyces graevenitziiAgraY09589
Actinomyces hordeovulnerisAhorX82448
Actinomyces howelliiAhowX80411
Actinomyces humiferusAhumX82449
Actinomyces hydrovaginalisAhyd_1X69616
Actinomyces israeliiAisrX82450
Actinomyces meyeriAmeyX82451
Actinomyces naeslundiiAnaeX53226
Actinomyces neuiiAneuX71862
Actinomyces odontolyticusAodoX80504
Actinomyces pyogenesApyoX79225
Actinomyces slackiiAslaX82452
Actinomyces sp.ACTI_1Y13025
Actinomyces urogenitalisAuroAJ243791
Actinomyces viscosusAvisX82453
Actinoplanes auranticolorAaur_2U58526
Actinoplanes brasiliensisAbraX93185
Actinoplanes capillaceusAcap_2AB013495
Actinoplanes cyaneusAcya_1X93186
Actinoplanes deccanensisAdecAJ277565
Actinoplanes garbadinensisAgarAJ277575
Actinoplanes humidusAhum_1AJ277571
Actinoplanes ianthinogenesAianAJ277576
Actinoplanes kinshanensisAkinAJ277577
Actinoplanes liguriaeAlig_1AJ277579
Actinoplanes missouriensisAmisAJ277572
Actinoplanes pallidoaurantiacusApalAJ277578
Actinoplanes penicillatusApenAJ277580
Actinoplanes philippinensisAphiX93187
Actinoplanes purpeobrunneusApurAJ277581
Actinoplanes pyriformisApyrAJ277582
Actinoplanes regularisAregX93188
Actinoplanes roseosporangiusArosAJ277583
Actinoplanes sp.ACTI_2L41047
Actinoplanes teichomyceticusAteiAJ277584
Actinoplanes tuftoflagellusAtufAJ277585
Actinoplanes utahensisAutaX80823
Actinoplanes violaceusAvioAJ277586
Actinopolyspora halophilaAhalX54287
Actinopolyspora mortivallisAmorZ22730
Actinosingapura polymorphaApol_1AF237815
Actinosynnema mirumAmirX84447
Actinosynnema pretiosumApreAF114800
Aerobic bacillusAbacL22759
Aerococcus christenseniiAchrY17318
Aerococcus urinaeAuriU64460
Aerococcus viridansAvir_1M58797
Aeromicrobium erythreumAeryM37200
Aeromicrobium fastidiosumAfasZ78209
Aeromonas allosaccharophilaAallS39232
Aeromonas caviaeAcavX74674
Aeromonas encheleiaAencAJ224309
Aeromonas enteropelogenesAentX71121
Aeromonas eucrenophilaAeucX74675
Aeromonas hydrophilaAhyd_2X87271
Aeromonas ichthiosmiaAichX71120
Aeromonas jandaeiAjanX74678
Aeromonas mediaAmedX74679
Aeromonas popoffiiApopAJ224308
Aeromonas salmonicidaAsal_1X71836
Aeromonas schubertiiAsch_1X74682
Aeromonas sobriaAsobX74683
Aeromonas sp.AERO_1X60417
Aeromonas trotaAtroX60415
Aeromonas veroniiAver_1X74684
Aerothermobacter marianasAmarAB011495
Afipia broomeaeAbroU87761
Afipia clevelandensisAcleM69186
Afipia felisAfelM65248
Agrobacterium agileAagiD88521
Agrobacterium atlanticumAatlD88526
Agrobacterium ferrugineumAfer_2D88522
Agrobacterium gelatinovorumAgelD88523
Agrobacterium kielienseAkieD88524
Agrobacterium meteoriAmet_1D88527
Agrobacterium radiobacterArad_1AJ130719
Agrobacterium rhizogenesArhiX67224
Agrobacterium rubiArub_3X67228
Agrobacterium sanguineumAsanAB021493
Agrobacterium sp.AGROZ30542
Agrobacterium stellulatumAsteD88525
Agrobacterium tumefaciensAtumX67223
Agrobacterium vitisAvitU45329
Agrococcus citreusAcit_1AJ012826
Agrococcus jenensisAjenX92492
Agromonas oligotrophicaAoli_1D78366
Agromyces cerinusAcerX77448
Agromyces fucosusAfucD45061
Agromyces mediolanusAmed_1D45056
Agromyces ramosumAramX77447
Agromyces succinolyticusAsuc_1D45055
Alcaligenes defragransAdef_2AJ005450
Alcaligenes eutrophusAeutM32021
Alcaligenes faecalisAfaeU71009
Alcaligenes latusAlatD88007
Alcaligenes sp.ALCAAJ002809
Alcaligenes xylosoxidansAxyl_3M22509
Alcaligenes xylosoxydansAxyl_4D88005
Alcanivorax borkumensisAborAF062642
Alcanovorax borkumiiAbor_1Y12579
Alicyclobacillus acidocaldariusAaciX62177
Alicyclobacillus acidoterrestrisAaci_2X60743
Alicyclobacillus cycloheptanicusAcycX51928
Alicyclobacillus hesperidensisAhesAJ133633
Alicyclobacillus sp.ALICAB004580
Alkalibacterium olivoapovliticusAoli_2AF143513
Alkalilimnicola ehrlichei MLHE-1AehrCP000453
Alkalispirillum mobilisAmobAF114783
Alkalliphilus auruminatorAaur_3AB037677
Allochromatium minutissimumAmin_2Y12369
Allochromatium warmingiiAwarY12365
Alloiococcus otitisAotiX59765
Allorhizobium undicolaAundY17047
Alterococcus agarolyticusAagaAF075271
Alteromonas distinctaAdisAF082564
Alteromonas elyakoviiAelyAF082562
Alteromonas macleodiiAmac_1Y18234
Alteromonas sp.ALTEY15322
Alteromonas vagaAvagX67025
Amaricoccus kaplicensisAkapU88041
Amaricoccus macauensisAmac_2U88042
Amaricoccus tamworthensisAtamU88044
Amaricoccus veronensisAver_2U88043
Aminobacter aganoensisAaga_1AJ011760
Aminobacter aminovoransAami_1AJ011759
Aminobacter niigataensisAniiAJ011761
Aminobacterium colombienseAcolAF069287
Aminobacterium mobilisAmob_1AF073521
Aminomonas paucivoransApauAF072581
Ammonifex degensiiAdegU34975
Ammoniphilus oxalaticusAoxa_1Y14579
Ammoniphilus oxalivoransAoxa_2Y14580
Amoebobacter pedioformisApedY12297
Amoebobacter pendensApen_1AJ002797
Amoebobacter purpureusApur_1Y12366
Amoebobacter roseusAros_1AJ006062
Amphibacillus xylanusAxyl_5D82065
Amycolata alniAalnX76954
Amycolata autotrophicaAautX54288
Amycolata hydrocarbonoxydansAhyd_3X76955
Amycolata nitrificansAnitX55609
Amycolata saturneaAsatX76956
Amycolatopsis albaAalbAF051340
Amycolatopsis azureaAazuX53199
Amycolatopsis balhimycinaAbalAJ508239
Amycolatopsis coloradensisAcol_1AF051341
Amycolatopsis fastidiosaAfas_1X53200
Amycolatopsis mediterraneiAmed_2X76957
Amycolatopsis methanolicaAmet_2X54274
Amycolatopsis orientalisAoriX81573
Amycolatopsis rubidusArub_4AF222022
Amycolatopsis rugosaArug_1AF051342
Amycolatopsis sacchariAsacAF223354
Amycolatopsis sp.AMYCX77959
Amycolatopsis sulphureaAsulAF051343
Amycolatopsis thermoflavaAtheAF052390
Anabaena affinisAaffAF247591
Anabaena bergiiAberAF160256
Anabaena circinalisAcirAF247589
Anabaena cylindricaAcylAF247592
Anabaena flos-aquaeAfloAF247590
Anabaena solitariaAsolAF247594
Anabaena sp.ANABX59559
Anabaena variabilisAvarAF247593
Anabaenopsis circularisAcir_1AF247595
Anaerobacter polyendosporusApol_2Y18189
Anaerobaculum thermoterrnumAthe_1U50711
Anaerobiospirillum succiniciproducensAsuc_2U96412
Anaerobranca horikoshiiAhor_1U21809
Anaerocellum thermophilumAthe_2L09180
Anaerofilum agileAagi_1X98011
Anaerofilum pentosovoransApen_2X97852
Anaeromusa acidaminophilaAaci_3AF071415
Anaeromyxobacter dehalogenans 2CP-CAdehCP000251
Anaeroplasma abactoclasticumAabaM25050
Anaeroplasma bactoclasticumAbac_1M25049
Anaeroplasma variumAvar_1M23934
Anaerovibrio burkinabensisAburAJ010961
Anaerovibrio glyceriniAglyAJ010960
Anaerovibrio lipolyticaAlipAJ010959
Anaerovorax odorimutansAodo_1AJ251215
Anaplasma marginaleAmar_1M60313
Ancona anconaAancZ21629
Ancylobacter aquaticusAaquM62790
Aneurinibacillus aneurinolyticusAaneX94194
Aneurinibacillus migulanusAmigX94195
Angiococcus disciformisAdis_1M94374
Antarcticum vesiculatumAvesM61002
Antarctobacter heliothermusAhelY11552
Aquamicrobium defluviiAdef_3Y15403
Aquamonas haywardensisAhayAF015258
Aquaspirillum delicatumAdel_1AF078756
Aquaspirillum gracileAgra_1AF078753
Aquaspirillum itersoniiAiteAB000477
Aquaspirillum magnetotacticumAmagM58171
Aquaspirillum metamorphumAmet_3Y18618
Aquaspirillum peregrinumAperAB000480
Aquaspirillum polymorphumApol_3AB000481
Aquaspirillum psychrophilumApsyAF078755
Aquaspirillum sinuosumAsinAF078754
Aquifex aeolicusAaeoAE000751
Aquifex pyrophilusApyr_1M83548
Aranicola proteolyticusApro_1U93263
Arcanobacterium haemolyticumAhae_1X73952
Archangium gephyraAgepM94273
Arcobacter butzleriAbutU34388
Arcobacter butzleriiAbut_1L14626
Arcobacter cryaerophilusAcry_1U25805
Arcobacter nitrofigilisAnit_1L14627
Arcobacter skirrowiAskiL14625
Arcobacter sp.ARCOL42994
Arhodomonas oleiferhydransAoleM26631
Arsenophonus nasoniaeAnasM90801
Arthrobacter agilisAagi_2AF134184
Arthrobacter atrocyaneusAatr_1X80746
Arthrobacter aurescensAaur_4X83405
Arthrobacter chlorophenolicusAchlAF102267
Arthrobacter citreusAcit_2X80737
Arthrobacter crystallopoietesAcry_2X80738
Arthrobacter globiformisAglo_2X80736
Arthrobacter haridrumAharAJ242532
Arthrobacter histidinolovoransAhisX83406
Arthrobacter ilicisAiliX83407
Arthrobacter keyseriAkeyAF256196
Arthrobacter nicotianaeAnicX80739
Arthrobacter nicotinovoransAnic_1X80743
Arthrobacter oxydansAoxyX83408
Arthrobacter pascensApas_1X80740
Arthrobacter polychromogenesApol_4X80741
Arthrobacter protophormiaeApro_2X80745
Arthrobacter psychrolactophilusApsy_1AF134183
Arthrobacter ramosusAram_1X80742
Arthrobacter rhombiArhoY15885
Arthrobacter siderocapsulatusAsidAJ007910
Arthrobacter simplexAsimM37693
Arthrobacter sp.ARTHAF099202
Arthrobacter sulfureusAsul_1X83409
Arthrobacter uratoxydansAuraX83410
Arthrobacter ureafaciensAure_1X80744
Asaia bogorensisAbogAB025931
Asiosporangium albidumAalb_1AB006176
Asteroleplasma anaerobiumAanaM22351
Asticcacaulis biprostheciumAbipAJ247193
Asticcacaulis excentricusAexcAJ247194
Atopobium minutumAmin_3X67148
Atopobium parvulumAparS44206
Atopobium rimaeArimS44205
Aureobacterium barkeriAbarX77446
Aureobacterium keratanolyticumAkerY14786
Aureobacterium ketoreductumAketAB004724
Aureobacterium kitamienseAkitAB013920
Aureobacterium liquefaciensAliq_1X77444
Aureobacterium sp.AUREY14699
Aureobacterium testaceumAtesX77445
Azoarcus communisAcomAF011343
Azoarcus evansiiAevaX77679
Azoarcus indigensAind_1L15531
Azoarcus sp.AZOAX83534
Azoarcus toluclasticusAtolAF123077
Azoarcus tolulyticusAtol_1U82665
Azorhizobium caulinodansAcauX94200
Azospira oryzaeAory_1AF170348
Azospirillum amazonenseAamaZ29616
Azospirillum brasilenseAbra_1Z29617
Azospirillum doebereineraeAdoeAJ238567
Azospirillum halopraeferensAhal_1Z29618
Azospirillum irakenseAiraZ29583
Azospirillum largomobileAlarX90759
Azospirillum lipoferumAlip_1Z29619
Azospirillum parooenseApar_1X90760
Azospirillum sp.AZOSX79726
Azotobacter vinelandiiAvin_1AY336565
Bacillus acidovoransBaciX77789
Bacillus agaradhaerensBaga