Ureaplasma urealyticum: Selected Intergenic Regions.
| IGR ID or CDS/IGR ID1 | Repeat Coord.2 | Unit Sequence3 | Num. Units4 | Adjoining CDS5 | CDS and Repeat Information6 |
|---|---|---|---|---|---|
|
IGR10 (10620..11004) |
10742..10749 | A | 8 | UU012 | CHP7 (possible TmpC related membrane lipoprotein) |
|
IGR13 (17385..17554) |
17522..17529 | A | 8 | UU016 | CHP (possible TmpC related membrane lipoprotein) |
|
IGR37 (45146..45311) |
45200..45216 | T | 17 | UU043 | CHP (possible membrane lipoprotein) |
|
IGR51 (79009..79295) |
(79097..79105) | T | 9 | UU062/ UU063 |
Repeat is at the 3' ends of ORFs. UU062: lysyl-tRNA synthetase; UU063: HP8 |
|
IGR51 (79009..79295) |
79229..79236 | A | 8 | UU062/ UU063 |
Repeat is at the 3' ends of ORFs. UU062: lysyl-tRNA synthetase; UU063: HP |
|
IGR51 (79009..79295) |
79269..79280 | TA | 6 | UU062/ UU063 |
Repeat is at the 3' ends of ORFs. UU062: lysyl-tRNA synthetase; UU063: HP |
|
IGR59 (86423..86440) |
86432..86439 | T | 8 | UU070 | FecCD/HmuU-related iron transport permease |
|
IGR76 (108475..108528) |
108515..108519 | G | 5 | UU089.1 | CHP |
|
IGR78 (110599..111213) |
110787..110794 | A | 8 | UU091 | Signal recognition particle (GTPase) |
|
IGR78 (110599..111213) |
110998..111005 | T | 8 | UU091 | Signal recognition particle (GTPase) |
|
IGR92 (136389..136790) |
136623..136630 | A | 8 | UU107 | Spermidine/putrescine ABC transporter |
|
IGR92 (136389..136790) |
136670..136677 | A | 8 | UU107 | Spermidine/putrescine ABC transporter |
|
IGR97 (145084..150368) |
145243..145250 | A | 8 | UU114 | Dihydrofolate reductase |
|
IGR97 (145084..150368) |
148037..148041 | G | 5 | UU114 | Dihydrofolate reductase |
|
IGR97 (145084..150368) |
148133..148137 | G | 5 | UU114 | Dihydrofolate reductase |
|
IGR97 (145084..150368) |
148925..148930 | G | 6 | UU114 | Dihydrofolate reductase |
|
IGR97 (145084..150368) |
149379..149383 | G | 5 | UU114 | Dihydrofolate reductase |
|
IGR104 (161517..161866) |
161789..161796 | A | 8 | UU122 | CHP |
|
IGR104 (161517..161866) |
161801..161809 | A | 9 | UU122 | CHP |
|
IGR109 (168953..169078) |
168971..168978 | T | 8 | UU126 | CHP |
|
IGR110 (169385..169526) |
169479..169486 | A | 8 | UU127 | HP |
|
IGR110 (169385..169526) |
169488..169495 |
A |
8 |
UU127 | HP |
|
IGR123 (187856..188297) |
188182..188186 | C | 5 | UU143 | CHP |
|
IGR127 (194600..195502) |
195276..195280 | C | 5 | UU157/ UU158 |
Repeat is at the 3' ends of ORFs. UU157: HP; UU158: HP |
|
IGR136 (210004..210377) |
210128..210145 | TA | 9 | UU171/UU172 | Potential bidirectional promoter between ORFs. UU171 UU9-specific CHP; UU172: UU-specific CHP (MBA N-term paralog) |
|
IGR140 (215983..216106) |
216039..216046 | T | 8 | UU175/ UU176 |
Repeat is at the 3' ends of ORFs. UU175: tryptophanyl-tRNA synthetase; UU176: CHP |
|
IGR144 (218462..218523) |
218477..218484 | T | 8 | UU180/ UU181> | Potential bidirectional promoter region between two genes. UU180: CHP; UU181: triosephosphate isomerase |
|
IGR178 (260512..260647) |
260630..260637 | A | 8 | UU218 | Ammonium transporter |
|
IGR180 (263911..264019) |
264007..264011 | G | 5 | UU220 | HP |
|
IGR184 (270329..270505) |
270401..270416 | TA | 8 | UU224 | CHP |
|
IGR192 (276121..276144)/ UU231 (276145..276846) |
276138..276145 | A | 8 | UU231 | 50S ribosomal protein L3 |
|
IGR211 (287710..287733)/ UU251 (287068..287709) |
287708..287715 | A | 8 | UU251/ UU252 |
Repeat is at the 3' ends of ORFs. UU251: adenylate kinase; UU252: methionine aminopeptidase |
|
IGR222 (297367..297576) |
297396..297415 | AT | 10 | UU263 | HP |
|
IGR223 (300526..300711) |
300551..300558 | T | 8 | UU264/ UU265 |
Potential bidirectional promoter region between two genes. UU264: cation-transporting P-ATPase; UU265: CHP |
|
IGR223 (300526..300711) |
300694..300701 | T | 8 | UU264/ UU265 |
Potential bidirectional promoter region between two genes. UU264: cation-transporting P-ATPase; UU265: CHP |
|
IGR253 (342689..342714) |
342705..342712 | A | 8 | UU302 | HP |
|
IGR255 (343662..348923) |
343800..343807 | A | 8 | UU304 | Transcription elongation factor GreA; IGR has rRNAs within; repeat before rRNAs |
|
IGR255 (343662..348923) |
346623..346627 | G | 5 | UU304 | Transcription elongation factor GreA; IGR has rRNAs within; repeat before rRNAs |
|
IGR255 (343662..348923) |
346719..346723 | G | 5 | UU304 | Transcription elongation factor GreA; IGR has rRNAs within; repeat before rRNAs |
|
IGR255 (343662..348923) |
347511..347516 | G | 6 | UU304 | Transcription elongation factor GreA; IGR has rRNAs within; repeat before rRNAs |
|
IGR255 (343662..348923) |
347965..347969 | G | 5 | UU304 | Transcription elongation factor GreA; IGR has rRNAs within; repeat before rRNAs |
|
IGR258 (351797..352029) |
351828..351844 | A | 17 | UU306/ UU307 |
Repeat is at the 3' ends of ORFs. UU306: endonuclease IV; UU307: HP (possible DNA replication initiation protein) |
|
IGR260 (354129..354464) |
354312..354319 | A | 8 | UU308/ UU309 |
Potential bidirectional promoter region between two genes. UU308: CHP; UU309: HP |
|
IGR260 (354129..354464) |
354366..354373 | A | 8 | UU308/UU309 | Potential bidirectional promoter region between two genes. UU308: CHP; UU309: HP |
|
IGR262 (355348..355935) |
355434..355442 | A | 9 | UU310 | 30S ribosomal protein S20 |
|
IGR277 (377032..377759) |
377704..377711 | A | 8 | UU330/UU331 | Repeat is at the 3' ends of ORFs. UU330: CHP; UU331: HP |
|
IGR281 (379340..379424) |
379369..379376 | T | 8 | UU335 | HP |
|
IGR282 (381468..381490) |
381470..381477 | A | 8 | UU336 | HP |
|
IGR290 (391330..391460) |
391418..391425 | T | 8 | UU345 | CHP |
|
IGR297 (403466..403538) |
403520..403527 | A | 8 | UU356 | UU-specific CHP |
|
IGR300 (407470..407617) |
407508..407522 | T | 15 | UU359 | UU-specific CHP |
|
IGR305 (416131..416223) |
416146..416153 | T | 8 | UU365 | Asparaginyl-tRNA synthetase |
|
IGR314 (428561..429224) |
428754..428761 | T | 8 | UU375 | Multiple banded antigen (MBA) |
|
IGR339 (464438..464667) |
464524..464531 | A | 8 | UU403/ UU404 |
Repeat is at the 3' ends of ORFs. UU403: CHP; UU404: transposase (ISRm3 related) |
|
IGR339 (464438..464667) |
464593..464610 | TA | 9 | UU403/ UU404 |
Repeat is at the 3' ends of ORFs. UU403: CHP; UU404: transposase (ISRm3 related) |
|
IGR343 (469595..469721) |
469607..469611 | C | 5 | UU407 | Heat shock protein |
|
IGR363 (496163..496463) |
496248..496255 | A | 8 | UU434/ UU435 |
Potential bidirectional promoter region between two genes. UU434: urease gamma subunit (urea amidohydrolase); UU435: ferrichrome ABC transporter |
|
IGR363 (496163..496463) |
496259..496266 | T | 8 | UU434/ UU435 |
Potential bidirectional promoter region between two genes. UU434: urease gamma subunit (urea amidohydrolase); UU435: ferrichrome ABC transporter |
|
IGR394 (537349..537637) |
537553..537568 | T | 16 | UU473 | UU-specific CHP |
| UU474 (540008..543949)/ IGR395 (539966..540007) |
539987..540009 | TA | 11.5 | UU474 | CHP |
|
IGR401 (553344..553653) |
553393..553409 | T | 17 | UU479/ UU480 |
Potential bidirectional promoter region between two genes. UU479: Uu specific CHP; UU480: CHP (poss. TmpC related membrane lipoprotein) |
|
IGR404 (572871..573096) |
572952..572967 | A | 16 | UU482 | CHP (CHP is 14,067 nt long) |
|
IGR405 (576409..576678) |
576483..576498 | A | 16 | UU483/ UU484 |
Potential bidirectional promoter region between two genes. UU483: CHP; UU484: acetate kinase |
|
IGR414 (611372..611598) |
611416..611433 | A | 18 | UU496/ UU497 |
Potential bidirectional promoter region between two genes. UU496: CHP; UU497: CHP |
|
IGR415 (612733..612831) |
612779..612797 | T | 19 | UU497/ UU498 |
Repeat is at the 3' ends of ORFs. UU497: CHP; UU498: 30S ribosomal protein S4 |
|
IGR421 (621267..621852) |
621463..621476 | A | 14 | UU503/ UU504 |
Potential bidirectional promoter region between two genes. UU503: putative glycosyltransferase; UU504: HP. tRNAs within IGR; repeat not in tRNAs |
|
IGR423 (624099..625202) |
624818..624825 | T | 8 | UU506/ UU507 |
Repeat is at the 3' ends of ORFs. UU506: acyl carrier protein; UU507: cytosol aminopeptidase (leucyl aminopeptidase) (peptidase S). tRNA in IGR; repeat not in tRNA |
|
IGR423 (624099..625202) |
625087..625094 | A | 8 | UU506/ UU507 |
Repeat is at the 3' ends of ORFs. UU506: acyl carrier protein; UU507: cytosol aminopeptidase (leucyl aminopeptidase) (peptidase S). tRNA in IGR; repeat not in tRNA |
|
IGR430 (636501..637427) |
636607..636614 | A | 8 | UU514/ UU515 |
Potential bidirectional promoter region between UU514 and UU515. IGR is loaded with tRNAs. Repeat not in tRNAs. UU514: elongation factor Ts (EF-Ts); UU515: CHP (possible ferrichrome ABC transporter) |
|
IGR430 (636501..637427) |
636629..636636 | T | 8 | UU514/ UU515 |
Potential bidirectional promoter region between UU514 and UU515. IGR is loaded with tRNAs. Repeat not in tRNAs. UU514: elongation factor Ts (EF-Ts); UU515: CHP (possible ferrichrome ABC transporter) |
|
IGR457 (677774..677821) |
677796..677803 | T | 8 | UU543/ UU544 |
Repeat is at the 3' ends of ORFs. UU543: CHP; UU544: GlutRNA-Gln amidotransferase B subunit/PET112 homolog |
|
IGR476 (705708..705906) |
705802..705810 | T | 9 | UU563.1/ UU565 |
Repeat is at the 3' ends of ORFs. UU563.1: HP; UU565: CHP |
|
IGR476 (705708..705906) |
705855..705862 | A | 8 | UU563.1/ UU565 |
Repeat is at the 3' ends of ORFs. UU563.1: HP; UU565: CHP |
|
IGR476 (705708..705906) |
705864..705871 | A | 8 | UU563.1/ UU565 |
Repeat is at the 3' ends of ORFs. UU563.1: HP; UU565: CHP |
|
IGR477 (707392..707525) |
707472..707479 | A | 8 | UU565 | CHP |
|
IGR480 (708912..708997) |
708953..708960 | A | 8 | UU568 | 30S ribosomal protein S16 |
|
IGR490 (724024..724217) |
724110..724118 | T | 9 | UU579 | CHP (possible amino acid permease) |
| IGR512 (749805..749865)/ UU601 (749804..749031) |
749811..749804 | A | 8 | UU601 | Dimethyladenosine transferase |
1 IGR ID or CDS/IGR ID: The intergenic region (IGR) ID or coding
region (CDS)/IGR overlapping IDs. Numbers in parenthesis designate the start and stop
coordinates in the Ureaplasma urealyticum genome. The ID was taken
from the UU database at www.stdgen.lanl.gov.
2 Repeat Coord.: Coordinates of the repeat, start..stop.
3 Unit Sequence: The sequence of the repeat unit.
4 Num. Units: number of units in the repeat, including
partial units.
5Adjoining CDS: Coding sequence adjoining the IGR. The CDS
was chosen based on its orientation to the IGR such that the IGR could provide
the transcriptional region for expression of the CDS.
6CDS and Repeat Information: the predicted function of the
CDS as defined by the www.stdgen.lanl.gov
UU database along with additional information regarding the CDS orientations.
7CHP: Conserved Hypothetical Protein
8HP: Hypothetical Protein
9UU-specific CHP: Ureaplasma urealyticum specific
conserved hypothetical protein.
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